SubtiBank SubtiBank
ydbJ [2018-05-04 18:27:54]
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ydbJ [2018-05-04 18:27:54]

similar to [SW|ABC transporter] (ATP-binding protein)
locus
BSU04490
pI
4.73
mw
34.12 kDa
protein length
308 aa Sequence Blast
gene length
924 bp Sequence Blast
function
unknown
product
[SW|ABC transporter] (ATP-binding protein)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.2|Exporters] → [category|SW 1.2.1.2.6|Exporters of unknown function]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    502,908 → 503,834

    The protein

    Protein family

  • [SW|ABC transporter] domain (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|70858AED096A80C1EAEB81F4B048368B665AB515|YhcH]

    • Structure

  • [PDB|4YER] (from Thermotoga maritima, 32% identity)

    • [SW|Localization]

  • membrane associated (via [protein|AE61E6752DF0F681C6DEBB8CD0970C7CDDA6F78E|YdbK]) [Pubmed|10092453]

    • Biological materials

    Mutant

  • BKE04490 (Δ[gene|5364730C4DD7FFFB238DA190889CECF6C63F1050|ydbJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04490 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAGCCTTCCTCCTTTT, downstream forward: _UP4_GTCTAAATTAATTTGGAATG
  • BKK04490 (Δ[gene|5364730C4DD7FFFB238DA190889CECF6C63F1050|ydbJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04490 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAGCCTTCCTCCTTTT, downstream forward: _UP4_GTCTAAATTAATTTGGAATG

    • References

  • 10092453,23033921,27120414